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TILLING REFERENCES

Barkley, N.A., Wang, M.L., Gillaspie, A.G., Dean, R.E., Pederson, G.A., Jenkins, T.M., 2008. Discovering and verifying DNA polymorphisms in a mung bean [V. radiata (L.) R. Wilczek] collection by EcoTILLING and sequencing. BMC Research Notes 1, 28-34.

Colbert, T., Till, B.J., Tompa, R., Reynolds, S., Steine, M., Yeung, A.T., McCallum, C.M., Comai, L., Henikoff, S., 2001. High-throughput screening for induced point mutations Plant Physiol. 126, 480-484.

Comai, L., Young, K., Till, B., Reynolds, S., Green, E.A., Codomo, C.A., Enns, L.C., Johnson, J.E., Burtner, C., Odden, A.R., Henikoff, S., 2003. Efficient discovery of DNA polymorphisms in natural populations by Ecotilling. The Plant Journal 37, 778-786.

Garvin, M.R., Gharrett, A.J., 2007. DEco-TILLING: An inexpensive method for SNP discovery that reduces ascertainment bias. Molecular Ecology Notes 7, 735-746.

Gilchrist, E., Haughn, G.W., Ying, C.C., Otto, S.P., Zhuang, J., Hamberger, B., Aboutorabi, F., Kalynkay, T., Johnson, L., Bohlmann, J., Ellis, B., Douglas, C.J., Cronk, Q.C.B., 2006. Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa. Mol. Ecol. 15, 1367-1378.

Henikoff, S., Comai, L., 2003. Single-nucleotide mutations for plant functional genomics. Annual Review of Plant Biology 54, 375-401.

Henikoff, S., Till, B.J., Comai, L., 2004. TILLING: Traditional mutagenesis meets functional genomics Plant Physiol. 135, 1-7.

Kadaru, S.B., Ydav, A.S., Fjellstrom, R.G., Oard, J.H., 2006. Alternative EcoTILLING protocol for rapid, cost-effective single nucleotide polymorphism discovery and genotyping in rice (Oryza sativa L.). Plant Molecular Biology Reporter 24, 3-22.

Langefors, A., Schantz, T.v., Widergre, B., 1998. Allelic variation of Mhc class II in Atlantic salmon; a population genetic analysis. Heredity 80, 568-575.

Mejlhede, N., Kyjovska, Z., Backes, G., Burhenne, K., Rasmussen, S.K., Jahoor, A., 2006. EcoTILLING for the identification of allelic variation within the powdery mildew resistance genes mlo and Mla of barley. Plant Breeding 125, 461-467.

Miller, K.M., Kaukinen, K.H., Beacham, T.D., Withler, R.E., 2001. Geographic heterogeneity in natural selection on an MHC locus in sockeye salmon. Genetica 111, 237-257.

Miller, K.M., Withler, R.E., 1996. Sequence analysis of a polymorphic Mhc class II gene in Pacific salmon. Immunogenetics 43, 337-351.

Miller, K.M., Withler, R.E., 1997. Mhc diversity in Pacific salmon: Population structure and trans-species allelism Hereditas, 83-95.

Miller, K.M., Withler, R.E., Beacham, T.D., 1997. Molecular evolution at Mhc genes in two populations of chinook salmon Oncorhynchus tshawytscha. Mol. Ecol. 6, 937-954.

Moran, P., 2002. Current conservation genetics: building an ecological approach to the synthesis of molecular and quantitative genetic methods Ecology of Freshwater Fish 11, 30-55.

Nieto, C., Piron, F., Dalmais, M., Marco, C.F., Moriones, E., Gomez-Guillamon, M.L., Truniger, V., Gomez, P., Garcia-Mas, J., Aranda, M.A., Bendahmane, A., 2007. EcoTILLING for the identification of allelic variants of melon eIF4E, a factor that controls virus susceptibility. BMC Plant Biology 7, 34-42.

Oleykowski, C.A., Mullins, C.R.B., Godwin, A., Yeung, A.T., 1998. Mutation detection using a novel plant endonuclease. Nucleic Acids Res. 26, 4597-4602.

Sokurenko, E.V., Tchesnokova, V., Yeung, A.T., Oleykowski, C.A., Trintchina, E., Hughes, K.T., Rashid, R.A., Brint, J.M., Moseley, S.L., Lory, S., 2001. Detection of simple mutations and polymorphisms in large genomic regions. Nucleic Acids Res. 29, 1-8.

Till, B., Comai, L., Henikoff, S., 2007. Tilling and Ecotilling for crop improvement. In: Genomics-Assisted Crop Improvement. Springer, Netherlands.

Till, B., Zerr, T., Bowers, E., Greene, E., Comai, L., Henikoff, S., 2006. High-throughput discovery of rare human nucleotide polymorphisms by Ecotilling. Nucleic Acids Res. 34, 1-12.

Till, B.J., Burtner, C., Comai, L., Henikoff, S., 2004. Mismatch cleavage by sinlge-strand specific nucleases. Nucleic Acids Res. 32, 2632-2641.

Till, B.J., Reynolds, S.H., Weil, C., Springer, N., Burtner, C., Young, K., Bowers, E., Codomo, C.A., Enns, L.C., Odden, A.R., Greene, E.A., Comai, L., Henikoff, S., 2004. Discovery of induced point mutations in maize genes by TILLING. BMC Plant Biology 4, 1-8.

Till, B.J., Zerr, T., Comai, L., Henikoff, S., 2006. A protocol for TILLING and EcoTILLING in plants and animals. Nature Protocols 1, 2465-2477.

Uauy, C., Paraiso, F., Colasuonno, P., Tran, R.K., Tsai, H., Berardi, S., Comai, L., Dubcovsky, J., 2009. A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biology 9, 1-36.

Wang, G.-X., Tan, M.-K., Rakshit, S., Saitoh, H., Terauchi, R., Imaizumi, T., Ohsako, T., Tominaga, T., 2007. Discovery of single-nucleotide mutations in acetolactate synthase genes by EcoTILLING. Pestic. Biochem. Physiol. 88, 143-148.

Wang, J., Chuang, K., Ahluwalia, M., Patel, S., Umblas, N., Mirel, D., Higuchi, R., Germer, S., 2005. High-throughput SNP genotyping by single-tube PCR with Tm-shift primers. Biotechniques 39, 885-892.

Yang, B., Wen, X., Kosali, N.S., Oleykowski, C.A., Miller, C.G., Kulinksi, J., Besack, D., Yeung, J.A., Kowalski, D., Yeung, A.T., 2000. Purification, cloning and characterization of the CEL1 nuclease. Biochemistry (Mosc). 39, 3533-3541.